Comparison-specialized visualization model for whole genome sequences

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dc.contributor.authorDa-Young, Lee
dc.contributor.authorKyung-Rim, Kim
dc.contributor.authorTaeyong, Kim
dc.contributor.authorHwan-Gue, Cho
dc.contributor.editorSkala, Václav
dc.date.accessioned2016-07-25T12:57:36Z
dc.date.available2016-07-25T12:57:36Z
dc.date.issued2016
dc.description.abstract-translatedAnalyzing and visualizing the whole genome sequence is very important to finding genetic evolution. Many researchers have used 2D or 3D DNA random walk plots to study short DNA sequences. However, visualizing a whole genome sequence is difficult because of overlapping, self-intersection, and biases. In this paper, we propose a 3D graphical representation of a whole-genome sequence based on a random walk plot. Our 3D graphical representation can reduce the overlaps or biases that can occur during the visualization of large sequences by using the 2D or 3D DNA walk plot algorithm. We visualized and compared data on the whole genomes of 10 species, including humans and anthropoid apes. In our experiment, the 3D graphical representation showed similarities between humans and apes and differences between other species.en
dc.format10 s.cs
dc.format.mimetypeapplication/pdf
dc.identifier.citationJournal of WSCG. 2016, vol. 24, no. 2, p. 43-52.en
dc.identifier.issn1213-6972 (print)
dc.identifier.issn1213-6980 (CD-ROM)
dc.identifier.issn1213-6964 (on-line)
dc.identifier.urihttp://wscg.zcu.cz/WSCG2016/!_2016_Journal_WSCG-No-2.pdf
dc.identifier.urihttp://hdl.handle.net/11025/21647
dc.language.isoenen
dc.publisherVáclav Skala - UNION Agencycs
dc.relation.ispartofseriesJournal of WSCGen
dc.rights© Václav Skala - UNION Agencycs
dc.rights.accessopenAccessen
dc.subjectDNAcs
dc.subjectvizualizacecs
dc.subjectrandom walkcs
dc.subjectpodobnostcs
dc.subject.translatedDNAen
dc.subject.translatedvisualizationen
dc.subject.translatedrandom walken
dc.subject.translatedsimilarityen
dc.titleComparison-specialized visualization model for whole genome sequencesen
dc.typečlánekcs
dc.typearticleen
dc.type.statusPeer-revieweden
dc.type.versionpublishedVersionen

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Volume 24, Number 2 (2016)